Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs4937047 | chr11:125687148 | C/T | 6.44E-5 | 177 | 15.95 | 11.6 | 4.1 | KM Plot |
| PAAD | rs4937061 | chr11:125731645 | C/T | 0.000141 | 175 | 15.95 | 11.6 | 4.1 | KM Plot |
| PAAD | rs4964288 | chr12:104746326 | G/T | 7.89E-13 | 178 | 15.48 | 15.57 | 1.37 | KM Plot |
| PAAD | rs4964741 | chr12:104660209 | T/C | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs4964752 | chr12:104663135 | T/C | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs4964754 | chr12:104663439 | A/G | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs4964761 | chr12:104669813 | C/T | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs4964779 | chr12:104694861 | C/T | 1.12E-12 | 176 | 1.37 | 15.8 | 15.53 | KM Plot |
| PAAD | rs4964784 | chr12:104734679 | G/A | 9.67E-13 | 177 | 1.37 | 15.8 | 15.48 | KM Plot |
| PAAD | rs496698 | chr11:74678575 | A/G | 9.38E-5 | 178 | 4.27 | 15.38 | 15.67 | KM Plot |
| PAAD | rs4985090 | chr16:8735581 | C/T | 0.000157 | 178 | 4.93 | 15.5 | 15.6 | KM Plot |
| PAAD | rs4985091 | chr16:8735813 | G/A | 0.000157 | 178 | 4.93 | 15.5 | 15.6 | KM Plot |
| PAAD | rs4986126 | chr17:80841198 | A/C | 5.78E-6 | 176 | 16.1 | 12.18 | 3.67 | KM Plot |
| PAAD | rs4986127 | chr17:80841199 | A/T | 5.78E-6 | 176 | 16.1 | 12.18 | 3.67 | KM Plot |
| PAAD | rs499648 | chr12:6144164 | T/C | 9.27E-13 | 177 | 1.37 | 14.73 | 15.62 | KM Plot |